CDS

Accession Number TCMCG017C33718
gbkey CDS
Protein Id OMO54258.1
Location join(44202..45379,45471..45957)
GeneID InterPro:IPR001406
Organism Corchorus olitorius
locus_tag COLO4_36544

Protein

Length 554aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01023290.1
Definition Pseudouridine synthase I, TruA [Corchorus olitorius]
Locus_tag COLO4_36544

EGGNOG-MAPPER Annotation

COG_category J
Description tRNA pseudouridine synthase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
KEGG_ko ko:K06173        [VIEW IN KEGG]
EC 5.4.99.12        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000049        [VIEW IN EMBL-EBI]
GO:0000959        [VIEW IN EMBL-EBI]
GO:0000963        [VIEW IN EMBL-EBI]
GO:0001522        [VIEW IN EMBL-EBI]
GO:0002153        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003727        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005739        [VIEW IN EMBL-EBI]
GO:0005759        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006400        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009982        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016556        [VIEW IN EMBL-EBI]
GO:0016853        [VIEW IN EMBL-EBI]
GO:0016866        [VIEW IN EMBL-EBI]
GO:0031119        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044429        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070525        [VIEW IN EMBL-EBI]
GO:0070900        [VIEW IN EMBL-EBI]
GO:0070902        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090646        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140053        [VIEW IN EMBL-EBI]
GO:1900864        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990481        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCTACAACCGCCACTTCTGACGACGAAGAAGTTGCTGGCGCCACCGACGGCGCCAAAAAGCAGAGATACAAACGCCGTAAGATCGCCATTTTCTTTGCCTATTGTGGCGTCGGCTATCAAGGCATGCAAAAAAATCCAGGAGCCAAAACCATCGAAGGCGACCTCGAAGAAGCGCTATTCCATGCCGGCGCAGTTCCAGAGCAAGACCGCGGCAACCCAAAACGCTACGATTGGGCTCGATCGGCCCGAACTGATAAGGGCGTTAGCGCTGTTGGTCAAGTCGTTTCTGGGCGATTCTACATCGACCCTCCTGGCCTCGTGGAGCGCCTTAATCAGATACTTCCTGCTCAGATTCGGATATTTGGGTATAAGCGTGTGACGGCGTCGTTTAACTCCAAGAAGTTTTGTGATCGGCGGCGGTATGTTTATCTCATCCCTGTTTTTGCTCTTGACCCAAGTTGTCATAGGGATAGGGAAAGTGTTATGGCTAGTTTAGGGTCCGGTAATGAGCTTGTTAAGTGCTTAGAGTGTTCAGAAAGAGGCCGTAAAGTCGCCGGTGTAATGGGTAAGCGTAGTTTTGAGGCAAAATCGACTGTAGTTCAGTCCGATATTTCTAACAATGGAGATGACATAAATGTAGTTAAAGATGAGAACTTGACATCTGAATTTAAGGATGCTACTGATAGTATTGTCCAGAATGAGTCCTCTGATGCTAAATCGATAATAGTTCAGTCTGACATTTCTTCGAACAATGGAGATGATATAAATTTAGTTAAGGAAGATAACCTGACATCTGAATTTAAGGAGGTTGCTGATAGCTCTGTCCAAAATGAGGTTACTGATGTTGATATTGATAGAAAACCTGTGGAAGAAAGAAAGTTTTGTTATGGTGAGGAAGAGAAGGAGAGATTCAATAGAATATTAAAGCATTATGTTGGGTCTCACAACTTCCATAACTTCACTACGAGAACAAAGGCTGAAGATCCTGCTGCGCGTCGTTATATTATTTCCTTTAACGCAAATACGGTTGTTAATGTTGAGGGTATGGATTTTGTCAAGTGTGAGGTTGTAGGTCAGAGCTTCATGCTTCATCAGATTCGAAAGATGATGGGAATGGCTGTTGCAGTTATGAGGAACTGTGCTCCTGAGTCACTTATTGAAACTGCATTGCGAAAGGATGTACACATCAATGTACCTACCGCACCTGAGGTTGGTTTGTATTTGGATGAGTGCCTCTTTGCATCATATAACCAAAAATGGAAAGATAGTCATGAAGAGTTGTCTATGAAAGCTTATGAAGAAGAGGCAGAGGGATTCAAAATGAAGTTTATATACTCTCATATTGCCTCGACTGAACGTGAGGAAGGAGTTGTGGGCCTATGGTTGCATTCTCTAAACCACAGAAACTATCCTGATTTACGGGCCTGCAATGGAAATGCAGTTGAAGGGAAGAGTCCTAAGGTGGATGATAATGCAGATACCACTGAGGAGAAAACTGCTGCAGTGGAGAAAAATGGAAATAATGATGAAAATGCAGTAGAAGGGAAGAGTCCTAAGGTGGATGATAATGCAGATACCACTGAAGAGAAAACTGCTGCAGTGGAGAAAAATGGAAACAATGATGAGGTACAAAGTACCAAAGAGGAAAAAATGACCGAATGA
Protein:  
MSTTATSDDEEVAGATDGAKKQRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEQDRGNPKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGLVERLNQILPAQIRIFGYKRVTASFNSKKFCDRRRYVYLIPVFALDPSCHRDRESVMASLGSGNELVKCLECSERGRKVAGVMGKRSFEAKSTVVQSDISNNGDDINVVKDENLTSEFKDATDSIVQNESSDAKSIIVQSDISSNNGDDINLVKEDNLTSEFKEVADSSVQNEVTDVDIDRKPVEERKFCYGEEEKERFNRILKHYVGSHNFHNFTTRTKAEDPAARRYIISFNANTVVNVEGMDFVKCEVVGQSFMLHQIRKMMGMAVAVMRNCAPESLIETALRKDVHINVPTAPEVGLYLDECLFASYNQKWKDSHEELSMKAYEEEAEGFKMKFIYSHIASTEREEGVVGLWLHSLNHRNYPDLRACNGNAVEGKSPKVDDNADTTEEKTAAVEKNGNNDENAVEGKSPKVDDNADTTEEKTAAVEKNGNNDEVQSTKEEKMTE